Introduction
Welcome to the tglow-r wiki! tglow-r is an R package for downstream analysis of tglow-pipeline outputs, modelled after Seurat, with data structures and utilities tailored to high-content imaging (HCI) data.
Please see the following pages for more information:
- Installing tglow-r
- Introduction to TglowDataset
- Operations on TglowDataset
- QC and hard filters
- Feature transformations, scaling
- Dimension reduction, clustering and plots
- Modelling on the feature space
- Differential abundance with MiloR
A index of all functions can be found here.